Package index • PaperPlotR

Themes and Colors

theme_lab(): Lab standard ggplot theme
available_lab_palettes(): List available discrete palettes
lab_palette(): Return a lab discrete palette
lab_gradient_palette(): Return a lab gradient palette
available_group_dictionaries(): List available semantic color dictionaries
group_colors(): Return semantic group color mappings
scale_color_lab(): Discrete lab color scale
scale_fill_lab(): Discrete lab fill scale
scale_color_groupmap(): Semantic color scale for group names
scale_fill_groupmap(): Semantic fill scale for group names

fig_specs: Canonical PaperPlotR figure specifications
available_fig_specs(): List available figure specifications
register_fig_spec(): Register a custom figure specification
panel_size(): Get a named panel size preset
get_fig_size_cm(): Compute figure width and height from a panel specification
recommend_panel_spec(): Recommend a PaperPlotR panel spec and layout
available_journal_presets(): List available journal presets
journal_preset(): Get a named journal preset
register_journal_preset(): Register a custom journal preset
available_output_presets(): List available output presets
register_output_preset(): Register a custom output preset
save_lab(): Save a plot using canonical lab figure specifications
save_lab_plot(): Save a plot with lab figure presets

layout_lab(): Compose multiple plots with a lab-standard patchwork layout
position_paper_jitter(): Standard jitter position for PaperPlotR point layers
layer_points_paper(): Standard raw-point layer for PaperPlotR comparison plots
layer_summary_paper(): Standard summary layers for PaperPlotR comparison plots
layer_signif_paper(): Standard significance annotation layer for PaperPlotR comparison plots
plot_box_paper(): PaperPlotR box plot with raw points and optional significance
plot_violin_paper(): PaperPlotR violin plot with box overlay and optional significance
plot_dot_paper(): PaperPlotR dot plot with summary overlay and optional significance

render_paperplotr_examples(): Render a gallery of paper-style example figures