PaperPlotR violin plot with box overlay and optional significance

Usage

plot_violin_paper(
  data,
  x,
  y,
  group = NULL,
  id = NULL,
  paired = FALSE,
  show_points = TRUE,
  show_summary = TRUE,
  summary_type = c("mean_se", "median_iqr"),
  log_scale = FALSE,
  dictionary = NULL,
  palette = NULL,
  facet = NULL,
  comparisons = NULL,
  show_signif = FALSE,
  test = NULL,
  ...
)

Arguments

data: A data frame.
x: Grouping column mapped to the x axis.
y: Numeric response column mapped to the y axis.
group: Optional grouping column used for fill mapping and dodging.
id: Optional sample id column used for paired designs.
paired: Whether to treat the design as paired.
show_points: Whether to draw raw points.
show_summary: Whether to add summary points and intervals.
summary_type: Summary style, either "mean_se" or "median_iqr".
log_scale: Whether to apply a log-scaled y axis.
dictionary: Optional semantic color dictionary name.
palette: Optional PaperPlotR palette name.
facet: Optional faceting column.
comparisons: Optional list of two-element character vectors used for significance annotation.
show_signif: Whether to add significance annotations.
test: Statistical test name. Currently only "wilcox" is supported.
...: Additional arguments forwarded to the underlying geometry layer.

Value

A ggplot object.